Bioinformatics

Data Analysis Packages

Below, we outline our data analysis packages, each comprising a specific set of analyses and output files. Additionally, we provide a round of discussion and assistance to help interpret the results. For certain packages, we also offer advanced analyses, which include additional, more time-consuming steps.

Package Overview	Description of the Output	Your Possible Next Steps
Single-cell RNA-seq Analysis	x
Spatial Transcriptome Analysis
Cell Segmentation
Multiome Analysis
Mapping and Counting	x	x
Differential Gene Expression Analysis	x	x
Peak Calling Analysis	x	x
Validation of CRISPR/Cas Experiments	x	x
Variation Analysis

Data Handling Packages

For data generated at our site, we offer the following data handling packages.

Package Overview
Setup of Custom Species
Sequence Data Upload
Data Retrieval from Archive

Other Services

Service	Description
IPA	Would you like to use IPA to explore your data? Click the link on the left to learn how to get started.